Linkage Disequilibrium - Analysis Software

Analysis Software

  • LDHat
  • Haploview
  • LdCompare— open-source software for calculating LD.
  • PyPop
  • SNP and Variation Suite- commercial software with interactive LD plot.
  • GOLD - Graphical Overview of Linkage Disequilibrium
  • TASSEL -software to evaluate linkage disequilibrium, traits associations, and evolutionary patterns

Read more about this topic:  Linkage Disequilibrium

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